BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB037A04SP1|AL430325
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1564 1583 0.0
>3x_Contig1564
Length = 11038
Score = 1583 bits (783), Expect = 0.0
Identities = 836/869 (96%), Gaps = 1/869 (0%)
Strand = Plus / Plus
Query: 2 acaataatcgagtggctaccaatctaattkacggataagtagcaatatgttacatgagac 61
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 5479 acaataatcgagtagctaccaatctaattgacggataagtagcaatatgttacat-agac 5537
Query: 62 atgcagctaataacaaatatcgattcatctgattctgaagatycagatctggtggcacgt 121
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5538 atgcagctaataacaaatatcgattcatctgattctgaagatccagatctggtggcacgt 5597
Query: 122 gacttatatggttagataaawwacatcaacatcttgacatctcacaggctgaagagaacc 181
|||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 5598 gactgaaatggttagataaaaaacatcaacatcttgacatctcacaggctgaagagaacc 5657
Query: 182 atatattccatcacttttttttaagccacattattccaaattwatktttattagcatagg 241
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 5658 atatattccatcacttttttttaagccacattattccaaattaatgtttattagcatagg 5717
Query: 242 aggccttakcaaaaccacaaggccaccgctgtwactattccctgctgagaaacttttctc 301
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 5718 aggccttagcaaaaccacaaggccaccgctgtaactattccctgctgagaaacttttctc 5777
Query: 302 cacaaawwatwagggcacaagttagcmccagggtccaagacttkccttcacctattkttc 361
|||||| || ||||||||||| ||| |||||||||||||||| |||||||||||| |||
Sbjct: 5778 cacaaaaaataagggcacaagtaagcaccagggtccaagacttgccttcacctattgttc 5837
Query: 362 ctttttccttgcagttgttatcactctttttwgggacccgcccctattaacattttccaa 421
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 5838 ctttttccttgcagttgttatcactctttttagggacccgcccctattaacattttccaa 5897
Query: 422 tgttgacaaawwaatcaggcttgawcattgaaaatggaagtyagtttttttttcatataa 481
|||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 5898 tgttgacaaaaaaatcaggcttgaacattgaaaatggaagtcagtttttttttcatataa 5957
Query: 482 twtwttatagattttgtaaattwagtgctattyaatkaggtttacagcgttgagcagggc 541
|||||||||| ||||||| ||||||||| ||| |||||||||||||||||||||||
Sbjct: 5958 aaaattatagatttggtaaattaagtgctattcaatgaggtttacagcgttgagcagggc 6017
Query: 542 aacaagaagcatagtagttccaccaagctacggggttttatccttacatttwtttttttt 601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 6018 aacaagaagcatagtagttccaccaagctacggggttttatccttacatttatttttttt 6077
Query: 602 gcatttcatagttcatccaagtggtgcacttttatcaattgtgagttttgcattattttt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6078 gcatttcatagttcatccaagtggtgcacttttatcaattgtgagttttgcattattttt 6137
Query: 662 ttttacttcattctgcctggacaaatttccatcaatttgcttatatacttttgtgctata 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6138 ttttacttcattctgcctggacaaatttccatcaatttgcttatatacttttgtgctata 6197
Query: 722 ggtcacagtacaagagagcacgtaggaaagacggcatttgcaaaagttttctcgaaggtt 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6198 ggtcacagtacaagagagcacgtaggaaagacggcatttgcaaaagttttctcgaaggtt 6257
Query: 782 aacccatttgtgttggcgttatacgcttactgtattttaactgctggcttttctcttttt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6258 aacccatttgtgttggcgttatacgcttactgtattttaactgctggcttttctcttttt 6317
Query: 842 ctttgcattctgaattcacatctatatgg 870
|||||||||||||||||||||||||||||
Sbjct: 6318 ctttgcattctgaattcacatctatatgg 6346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.715 1.33
Gapped
Lambda K H
1.40 0.715 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6752
Number of Sequences: 1807
Number of extensions: 6752
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.8 bits)
S2: 49 (99.6 bits)